<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <meta http-equiv="X-UA-Compatible" content="chrome=1" /> <meta name="title" content="miRNAtools" /> <meta name="description" content="Tools for miRNA analysis" /> <link rel="stylesheet" type="text/css" href="./Styles/standard-css.css" /> <link rel="stylesheet" type="text/css" href="./Styles/overlay.css" /> <!--[if IE]> <link rel="stylesheet" type="text/css" href="./system/app/css/camelot/allthemes%2die.css" /> <![endif]--> <title>miRNAtools</title> </head> <body xmlns="http://www.miRNAtools.eu" id="div" class="en"> <div id="sites-chrome-everything-scrollbar"> <div id="sites-chrome-everything"> <div id="sites-chrome-page-wrapper" style="direction: ltr;"> <div id="sites-chrome-page-wrapper-inside"> <div xmlns="http://www.w3.org/1999/xhtml" id="sites-chrome-header-wrapper" style=""> <table id="sites-chrome-header" class="sites-layout-hbox" style="" cellspacing="0"> <tbody> <tr> <td>&nbsp;</td> </tr> <tr> <td id="sites-header-title" class="sites-chrome-header-valign-top"><img id="logo-img-id" src="./Images/customLogo.jpg" alt="Logo" class="sites-logo sites-header-valign-top" /></td> </tr> <tr> <td>&nbsp;</td> </tr> <tr class="sites-header-secondary-row" id="sites-chrome-horizontal-nav"> <td colspan="2" id="sites-chrome-header-horizontal-nav-container"> <div class="sites-header-nav"> <ul class="sites-header-nav-container-tabs"> <li class="current"><a class="sites-navigation-link current" href="./index.html">Home</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./introduction.html">Non-coding RNAs</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./mirnas.html">miRNAs</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./general-purpose-databases.html">General Purpose Databases</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./specialized-databases.html">Specialized Databases</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./single-applications.html">Single applications</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./multiple-predictors.html">Multiple predictors</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./integrative-analysis.html">Integrative analysis</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./validated-targets.html">Validated targets</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./pathway-analysis.html">Pathway analysis</a></li> <!-- <li class="unselected"><a class="sites-navigation-link unselected" href="./TFmiRNA/loops.html">MiRNAs &amp; TFs regulation loops</a></li> --> <li class="unselected"><a class="sites-navigation-link unselected" href="./rna-structure.html">RNA structure</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./in-silico-mirna-pred.html">In silico miRNA prediction</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./small-rnaseq-data.html">Small RNAseq tools</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./plant-mirna-targets.html">Plant miRNA targets</a></li> <li class="unselected"><a class="sites-navigation-link unselected" href="./mir-34-tutorial.html">miR-34 Tutorial: basic features</a></li> </ul> <div style="clear: both;"></div> </div> </td> </tr> </tbody> </table> </div> <div id="sites-chrome-main-wrapper"> <div id="sites-chrome-main-wrapper-inside"> <table id="sites-chrome-main" class="sites-layout-hbox" border="0" cellpadding="{scmCellpadding}" cellspacing="0"> <tbody> <tr> <td id="sites-chrome-sidebar-left" class="sites-layout-sidebar-left" style="width: 200px;"> <div xmlns="http://www.w3.org/1999/xhtml" id="COMP_5413880217820406" class="sites-embed"> <h4 class="sites-embed-title">Introduction</h4> <div class="sites-embed-content sites-sidebar-nav"> <ul> <li class="nav-first"> <div style="padding-left: 5px;" dir="ltr"><a href="./introduction.html" class="sites-navigation-link">Non-coding RNAs</a></div> </li> <li class=""> <div style="padding-left: 5px;" dir="ltr"><a href="./mirnas.html" class="sites-navigation-link">miRNAs</a></div> </li> </ul> </div> </div> <div xmlns="http://www.w3.org/1999/xhtml" id="COMP_2bd" class="sites-embed"> <h4 class="sites-embed-title">Databases</h4> <div class="sites-embed-content sites-sidebar-nav"> <ul> <li class="nav-first"> <div style="padding-left: 5px;" dir="ltr"><a href="./general-purpose-databases.html" class="sites-navigation-link">General Purpose Databases</a></div> </li> <li class=""> <div style="padding-left: 5px;" dir="ltr"><a href="./specialized-databases.html" class="sites-navigation-link">Specialized Databases</a></div> </li> </ul> </div> </div> <div xmlns="http://www.w3.org/1999/xhtml" id="COMP_48559382976964116" class="sites-embed"> <h4 class="sites-embed-title">Targets</h4> <div class="sites-embed-content sites-sidebar-nav"> <ul> <li class="nav-first"> <div style="padding-left: 5px;" dir="ltr"><a href="./single-applications.html" class="sites-navigation-link">Single applications</a></div> </li> <li class=""> <div style="padding-left: 5px;" dir="ltr"><a href="./multiple-predictors.html" class="sites-navigation-link">Multiple predictors</a></div> </li> <li class=""> <div style="padding-left: 5px;" dir="ltr"><a href="./integrative-analysis.html" class="sites-navigation-link">Integrative analysis</a></div> </li> <li class=""> <div style="padding-left: 5px;" dir="ltr"><a href="./validated-targets.html" class="sites-navigation-link">Validated targets</a></div> </li> <li class=""> <div style="padding-left: 5px;" dir="ltr"><a href="./pathway-analysis.html" class="sites-navigation-link">Pathway analysis</a></div> </li> </ul> </div> </div> <!-- <div xmlns="http://www.w3.org/1999/xhtml" id="COMP_TFmiRNA" class="sites-embed"> <h4 class="sites-embed-title">miRNAs and TFs</h4> <div class="sites-embed-content sites-sidebar-nav"> <ul> <li class="nav-first"> <div style="padding-left: 5px;" dir="ltr"><a href="./TFmiRNA/loops.html" class="sites-navigation-link">miRNAs &amp; TFs regulation loops</a></div> </li> </ul> </div> </div> --> <div xmlns="http://www.w3.org/1999/xhtml" id="COMP_160960600245744" class="sites-embed"> <h4 class="sites-embed-title">In silico miRNA prediction</h4> <div class="sites-embed-content sites-sidebar-nav"> <ul> <li class="nav-first"> <div style="padding-left: 5px;" dir="ltr"><a href="./rna-structure.html" class="sites-navigation-link">RNA structure</a></div> </li> <li class=""> <div style="padding-left: 5px;" dir="ltr"><a href="./in-silico-mirna-pred.html" class="sites-navigation-link">In silico miRNA prediction</a></div> </li> </ul> </div> </div> <div xmlns="http://www.w3.org/1999/xhtml" id="COMP_6569216910284013" class="sites-embed"> <h4 class="sites-embed-title">Deep Sequencing Tools</h4> <div class="sites-embed-content sites-sidebar-nav"> <ul> <li class="nav-first"> <div style="padding-left: 5px;" dir="ltr"><a href="./small-rnaseq-data.html" class="sites-navigation-link">Small RNAseq tools</a></div> </li> </ul> </div> </div> <div xmlns="http://www.w3.org/1999/xhtml" id="COMP_22762777982279658" class="sites-embed"> <h4 class="sites-embed-title">Plant miRNAs</h4> <div class="sites-embed-content sites-sidebar-nav"> <ul> <li class="nav-first"> <div style="padding-left: 5px;" dir="ltr"><a href="./plant-mirna-targets.html" class="sites-navigation-link">Plant miRNA targets</a></div> </li> </ul> </div> </div> <div xmlns="http://www.w3.org/1999/xhtml" id="COMP_3271880034670751" class="sites-embed"> <h4 class="sites-embed-title">TUTORIALS</h4> <div class="sites-embed-content sites-sidebar-nav"> <ul> <li class="nav-first"> <div style="padding-left: 5px;" dir="ltr"><a href="./mir-34-tutorial.html" class="sites-navigation-link">miR-34 Tutorial: basic features</a></div> </li> </ul> </div> </div> </td> <td id="sites-canvas-wrapper"> <div id="sites-canvas"> <div xmlns="http://www.w3.org/1999/xhtml" id="title-crumbs" style=""></div> <h3 xmlns="http://www.w3.org/1999/xhtml" id="sites-page-title-header" style="" align="left"> <span id="sites-page-title" dir="ltr">Home</span> </h3> <div id="sites-canvas-main" class="sites-canvas-main"> <div id="sites-canvas-main-content"> <table xmlns="http://www.w3.org/1999/xhtml" class="sites-layout-name-one-column sites-layout-hbox" cellspacing="0"> <tbody> <tr> <td class="sites-layout-tile sites-tile-name-content-1"> <div dir="ltr">miRNAs are small non-coding RNAs, that act as negative regulators of the genomic output. Their intrinsic importance within Cell Biology and Human Disease is well known. Their mechanism of action based on the base pairing binding to their cognate targets, have helped the development of many computer applications for the prediction of miRNA function. More recently, many other applications have appeared with the objective of studying miRNA function in many contexts.&nbsp; <div><br /> </div> <div>This page is a compilation of tools to analyze miRNAs and their regulatory actions, that tries to collect and organize the information that is disperse in the web. This new version has been refurbished and updated with new available software. Some sections have been completed with comparative assessments in order to help the user to choose a particular application.</div> <div><br /> </div> <div><br /> <br /> <br /> <div style="text-align: right;"><b>Francisco J. Enguita, Ph.D.</b><br /> Unidade de Biologia Celular<br /> Instituto de Medicina Molecular<br /> Universidade de Lisboa<br /> Lisboa, PORTUGAL<br /> E-mail : fenguita_at_fm.ul.pt<br /> <br /> <br /> <div> <div class="sites-embed-align-right-wrapping-off"> <div class="sites-embed-border-on sites-embed" style="width: 200px;"></div> </div> </div> <br /> </div> </div> </div> </td> </tr> </tbody> </table> </div> </div> </div> </td> </tr> </tbody> </table> </div> </div> <div id="sites-chrome-footer-wrapper"> <div id="sites-chrome-footer"> <div xmlns="http://www.w3.org/1999/xhtml" class="sites-subfooter"> <div dir="ltr"> <div style="margin: 5px 10px; display: inline; float: right;"><a href="http://imm.fm.ul.pt/web/imm/home" target="_blank"><img alt="" src="./Images/LogoSecundario_Positivo.jpg" border="0" /></a></div> <div style="text-align: left;">(c) <b>Francisco J. Enguita</b>, 2014</div> <div style="text-align: left;">Instituto de Medicina Molecular</div> <div style="text-align: left;">Universidade de Lisboa, Portugal.</div> </div> </div> </div> </div> </div> </div> </div> </div> </body> </html>